PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G045500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 855aa    MW: 95712.8 Da    PI: 6.591
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G045500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56e-24159260199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F  
  Manes.14G045500.1.p 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELMAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 246
                          99*****************************73.3334459************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+v+v+r+
  Manes.14G045500.1.p 247 -RGENGELRVGVRRA 260
                          .449999*****996 PP

2Auxin_resp1201.8e-39285367183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+st+++F+v+Y+Pr+s++eF+v+v+++++++k+++svGmRfkm+fe+e+++e+r++Gt+vg++d dp rW++SkWr+Lk
  Manes.14G045500.1.p 285 AWHAISTGTMFTVYYKPRTSPAEFIVPVDRYMESIKNNYSVGMRFKMRFEGEEAPEQRFTGTIVGIEDGDPKRWRESKWRCLK 367
                          89*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-41155274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-40156288IPR015300DNA-binding pseudobarrel domain
CDDcd100177.18E-21157259No hitNo description
SMARTSM010192.3E-23159261IPR003340B3 DNA binding domain
PfamPF023621.0E-21159260IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914159261IPR003340B3 DNA binding domain
PfamPF065071.9E-36285367IPR010525Auxin response factor
PfamPF023094.9E-11719813IPR033389AUX/IAA domain
SuperFamilySSF542778.83E-13725805No hitNo description
PROSITE profilePS5174523.946728812IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MDSTEISTKG NGGNARGESF SSGHSEPNDH RNTMEGQKSH STRPISARDA ETALYTELWH  60
ACAGPLVTVP RERERVFYFP QGHIEQVEAS TNQLADQQMP VYDLPSKILC TVINVQLKAE  120
PDTDEVFAQV TLLPDPNQDE SAIDKEAPLP PPRFRVHSFC KTLTASDTST HGGFSVLRRH  180
ADECLPPLDM SRQPPTQELM AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG  240
DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK  300
PRTSPAEFIV PVDRYMESIK NNYSVGMRFK MRFEGEEAPE QRFTGTIVGI EDGDPKRWRE  360
SKWRCLKVKW DETSTIPRPE RVSPWSIEPA LAPPALNPLP MPRPKRPRSN MVPSSPDSSV  420
LTREGSSKVT FDPQPPSGYL RVLQGQEFQT LRGNFAECNE SDTVEKSVVW PSSLEDEKVD  480
SVSASSRHGS DWILSGGPKP TCTDLLSGFG THVDSSHRFG AHIVDQTSTA ASRKLVLEQE  540
GKFNLLASPW SLMSSGLSLK LSDSNTKVPE KDCDMAFEAR GNIRCSAFNE YAMLNGHRVE  600
QSHGNWLMPP PPSHFDNHAH ARELGRKPIL VREHEIGKST DGKCKLFGIR LFNNPVMPES  660
AASHRNLVDD PMSCIHPQSH QLHVLDSDRS EQSKGSKMAD ENEYEKQLQA GLLHTSVNQS  720
KVQSVSTRSC TKVHKQGIVL GRSVDLTKFN NYDELVAELD RLFEFDGELM APKKNWLIVY  780
TDDEGDMMLV GDDPWQEFVG MVRKIFIYTR EEVQKMNPGT LNSKGDENLL DAEGMDAKEL  840
KCLPLPPVHN TEIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B1e-1785338918354Auxin response factor 1
4ldw_A1e-1785338918354Auxin response factor 1
4ldv_A1e-1785338918354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220040.0KF022004.1 Jatropha curcas auxin response factor (ARF) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090599.10.0PREDICTED: auxin response factor 2-like
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A067JF520.0A0A067JF52_JATCU; Auxin response factor
STRINGVIT_17s0000g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32813366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2